NCBI

BLAST

Multiple sequence alignment and phylogeneticsPart 1: Multiple Sequence Alignment (MSA)Part 2: PhylogeneticsPart 3: Genetic drift

Figure 1

Alignments shown in seaview

Figure 2

Alignments shown in seaview

Figure 3

Manually built UPGMA tree
UPGMA tree

Figure 4

Reads, QC and trimming

Figure 1

Schematic workflow of the bioinformatics workflow

Figure 2

Quality control workflow

Figure 3

A FastQC output showing reads with good quality

Figure 4

A FastQC output showing reads with bad quality

Sequence assembly

Protein structure prediction

Mapping

Figure 1

Mapping of SNP reads

Figure 2

Figtree
As shown by FigTree

Figure 3

phylo.io
As shown by phylo.io

Molecular epidemiology

Figure 1

workflow